Regenerate makefiles to include new source files

Makefile.in

@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
+# Makefile.in generated by automake 1.13.4 from Makefile.am.
 # @configure_input@
 
 # Copyright (C) 1994-2013 Free Software Foundation, Inc.
@@ -86,7 +86,7 @@ DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am \
 	autotools/ar-lib autotools/compile autotools/config.guess \
 	autotools/config.rpath autotools/config.sub autotools/depcomp \
 	autotools/install-sh autotools/missing autotools/ltmain.sh \
-	$(top_srcdir)/autotools/ar-lib $(top_srcdir)/autotools/compile \
+	$(top_srcdir)/autotools/ar-lib \
 	$(top_srcdir)/autotools/config.guess \
 	$(top_srcdir)/autotools/config.rpath \
 	$(top_srcdir)/autotools/config.sub \
@@ -892,16 +892,10 @@ dist-xz: distdir
 	$(am__post_remove_distdir)
 
 dist-tarZ: distdir
-	@echo WARNING: "Support for shar distribution archives is" \
-	               "deprecated." >&2
-	@echo WARNING: "It will be removed altogether in Automake 2.0" >&2
 	tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
 	$(am__post_remove_distdir)
 
 dist-shar: distdir
-	@echo WARNING: "Support for distribution archives compressed with" \
-		       "legacy program 'compress' is deprecated." >&2
-	@echo WARNING: "It will be removed altogether in Automake 2.0" >&2
 	shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
 	$(am__post_remove_distdir)
 
@@ -943,10 +937,9 @@ distcheck: dist
 	  && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
 	  && am__cwd=`pwd` \
 	  && $(am__cd) $(distdir)/_build \
-	  && ../configure \
+	  && ../configure --srcdir=.. --prefix="$$dc_install_base" \
 	    $(AM_DISTCHECK_CONFIGURE_FLAGS) \
 	    $(DISTCHECK_CONFIGURE_FLAGS) \
-	    --srcdir=.. --prefix="$$dc_install_base" \
 	  && $(MAKE) $(AM_MAKEFLAGS) \
 	  && $(MAKE) $(AM_MAKEFLAGS) dvi \
 	  && $(MAKE) $(AM_MAKEFLAGS) check \